Code, Apps and Docs

Code and Apps

  • Source code managed by version control and released securely to clients
  • Cleaning and packaging of code for release (e.g. R bioconductor/CRAN packages such as mixtR )
  • Production of interactive statistical analyses tools or static study reports
  • Development of user-friendly web application to browse results (e.g. MIxT is an example of my work).
  • Emphasis is placed on reproducibility (with tools such as Rmarkdown and git)

Docs

  • Powerpoint presentation and figures
  • Scientific illustrations
  • Manuscript/white paper preparation
  • Assistance for response to reviewers
  • Development of press releases

Miscellaneous

  • Establish general bioinformatics resources
  • Design, plan, and implement bioinformatic pipelines
  • Website design